The seeding time is set to the mean of the specified delays, constrained to be at least the maximum generation time
Usage
get_seeding_time(delays, generation_time, rt = rt_opts())
Arguments
- delays
A call to
delay_opts()
defining delay distributions and options. See the documentation ofdelay_opts()
and the examples below for details.- generation_time
A call to
generation_time_opts()
defining the generation time distribution used. For backwards compatibility a list of summary parameters can also be passed.- rt
A list of options as generated by
rt_opts()
defining Rt estimation. Defaults tort_opts()
. Set toNULL
to switch to using back calculation rather than generating infections using Rt.