EpiNow2 Stan Functions
infections.stan File Reference

Functions in this File

real update_infectiousness (vector infections, vector gt_rev_pmf, int seeding_time, int index)
 
vector generate_infections (vector R, int uot, vector gt_rev_pmf, array[] real initial_infections, int pop, int ht, int obs_scale, real frac_obs, int initial_as_scale)
 Generate infections using a renewal equation approach.
 
vector deconvolve_infections (vector shifted_cases, vector noise, int fixed, int prior)