rt.stan File Reference

Functions in this File
real	R_to_r (real R, vector gt_rev_pmf, real abs_tol)
real	R_to_r_newton_step (real R, real r, vector pmf)
void	rt_lp (array[] real initial_infections_scale, vector bp_effects, array[] real bp_sd, int bp_n, array[] int cases, real initial_infections_guess)
vector	update_Rt (int t, real R0, vector noise, array[] int bps, vector bp_effects, int stationary)
	Update a vector of effective reproduction numbers (Rt) based on an intercept, breakpoints (i.e. a random walk), and a Gaussian process.