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| vector | update_Rt (int t, real R0, vector noise, array[] int bps, vector bp_effects, int stationary, int n_centre) |
| | Update a vector of effective reproduction numbers (Rt) based on an intercept, breakpoints (i.e. a random walk), and a Gaussian process.
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| |
| void | rt_lp (array[] real initial_infections_scale, vector bp_effects, array[] real bp_sd, int bp_n, array[] int cases, real initial_infections_guess) |
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| real | R_to_r_newton_step (real R, real r, vector pmf) |
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| real | R_to_r (real R, vector gt_rev_pmf, real abs_tol) |
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1.12.0