summaryWidget

Create an Rt visualisation using D3. Need convenience functions to define defaults

summaryWidget(
  geoData = NULL,
  rtData = NULL,
  data_ref = NULL,
  subregional_ref = NULL,
  ts_color_ref = NULL,
  ts_bar_color = "lightgrey",
  projection = "geoEquirectangular",
  map_legend_ref = NULL,
  credible_threshold = 10,
  width = NULL,
  activeArea = "United Kingdom",
  downloadUrl = NULL,
  dryRun = FALSE
)

Arguments

geoData

sf object, map data

rtData

data.frame, rt estimates in the format 'Source':'rtData':x, 'casesInfectionData':x, 'casesReportData':x, 'obsCasesData':x, ...

data_ref

list, reference for input data column names. Specify the column holding geometry to be symbolized 'rtData':'geometry_name':'region', ...

subregional_ref

list, reference to subnational estimates in the format 'country_name':'url', ....

ts_color_ref

list, reference for colors for time series plots.

ts_bar_color

string, color of observed cases bars in time series plots.

projection

string, map projection, must be named in d3-geo-projection.

map_legend_ref

list, reference for map legend variables

credible_threshold

integer, Threshold for credible intervals, maximum observed cases * this value will be removed.

width

integer, Width of widget in pixels.

activeArea

string, Area to symbolize first.

downloadUrl

string, URL to download data.

dryRun

Logical, defaults to FALSE. Should the function be tested without the widget being created. Useful for checking the integrity of input data.