Define observed data for a scenario
Arguments
- obs
A dataframe of observations as returned by
latest_obs()or similar.- seq_lag
Number, number of weeks to lag sequence data behind date of observation.
- seq_samples
Fraction of sequence samples to include.
See also
Functions to define and create data scenarios
define_scenarios(),
update_obs_availability()
Examples
generate_obs_scenario(latest_obs(germany_covid19_delta_obs), 4, 0.1)
#> date location_name location cases cases_available seq_total seq_voc
#> 1: 2021-03-20 Germany DE 87328 2021-03-20 NA NA
#> 2: 2021-03-27 Germany DE 109442 2021-03-27 NA NA
#> 3: 2021-04-03 Germany DE 117965 2021-04-03 NA NA
#> 4: 2021-04-10 Germany DE 107223 2021-04-10 NA NA
#> 5: 2021-04-17 Germany DE 142664 2021-04-17 411 1
#> 6: 2021-04-24 Germany DE 145568 2021-04-24 454 3
#> 7: 2021-05-01 Germany DE 131887 2021-05-01 367 5
#> 8: 2021-05-08 Germany DE 107141 2021-05-08 455 9
#> 9: 2021-05-15 Germany DE 77261 2021-05-15 369 10
#> 10: 2021-05-22 Germany DE 57310 2021-05-22 382 12
#> 11: 2021-05-29 Germany DE 33052 2021-05-29 278 10
#> 12: 2021-06-05 Germany DE 22631 2021-06-05 220 18
#> 13: 2021-06-12 Germany DE 15553 2021-06-12 157 31
#> 14: 2021-06-19 Germany DE 7659 2021-06-19 99 41
#> 15: 2021-06-26 Germany DE 5033 2021-06-26 71 45
#> 16: 2021-07-03 Germany DE 4181 2021-07-03 80 63
#> 17: 2021-07-10 Germany DE 5067 2021-07-10 74 64
#> 18: 2021-07-17 Germany DE 7969 2021-07-17 56 52
#> 19: 2021-07-24 Germany DE 11122 2021-07-24 NA NA
#> 20: 2021-07-31 Germany DE 14654 2021-07-31 NA NA
#> 21: 2021-08-07 Germany DE 18474 2021-08-07 NA NA
#> 22: 2021-08-14 Germany DE 28646 2021-08-14 NA NA
#> 23: 2021-08-21 Germany DE 44862 2021-08-21 NA NA
#> 24: 2021-08-28 Germany DE 62984 2021-08-28 NA NA
#> 25: 2021-09-04 Germany DE 71057 2021-09-04 NA NA
#> 26: 2021-09-11 Germany DE 75107 2021-09-11 NA NA
#> date location_name location cases cases_available seq_total seq_voc
#> share_voc seq_available
#> 1: NA <NA>
#> 2: NA <NA>
#> 3: NA <NA>
#> 4: NA <NA>
#> 5: 0.001460565 2021-05-15
#> 6: 0.007490637 2021-05-22
#> 7: 0.014725934 2021-05-29
#> 8: 0.019573345 2021-06-05
#> 9: 0.027386117 2021-06-12
#> 10: 0.031176316 2021-06-19
#> 11: 0.036677454 2021-06-26
#> 12: 0.082385071 2021-07-03
#> 13: 0.197318008 2021-07-10
#> 14: 0.417759839 2021-07-17
#> 15: 0.638810198 2021-07-24
#> 16: 0.785803238 2021-07-31
#> 17: 0.874829932 2021-08-07
#> 18: 0.923758865 2021-08-14
#> 19: NA <NA>
#> 20: NA <NA>
#> 21: NA <NA>
#> 22: NA <NA>
#> 23: NA <NA>
#> 24: NA <NA>
#> 25: NA <NA>
#> 26: NA <NA>
#> share_voc seq_available