Real-time infection dynamics and forecasting
covidregionaldata is an interface to subnational and national level COVID-19 data.
covid19.nhs.data is an R package that contains a many-to-many mapping between local authority districts and NHS Acute Trusts in England.
scoringutils is an R package to evaluate forecasts. It provides a collection of metrics and proper scoring rules that make it simple to score forecasts against the true observed values.
Social contact patterns
epimixr is an R package to conduct epidemiological analysis using these contact matrices.
Bayesian inference using state-space models with high-performance hardware
rbi.helpers is a supporting package for rbi, especially for constructing proposal distributions and determining the number of particles.