Functions in this File
real	expgrowth_lpdf (real x, real xmin, real xmax, real r)

int	check_for_analytical (int dist_id, int primary_id)

real	primarycensored_gamma_uniform_lcdf (data real d, real q, array[] real params, data real pwindow)

real	primarycensored_lognormal_uniform_lcdf (data real d, real q, array[] real params, data real pwindow)

real	log_weibull_g (real t, real shape, real scale)

real	primarycensored_weibull_uniform_lcdf (data real d, real q, array[] real params, data real pwindow)

real	primarycensored_analytical_lcdf_raw (data real d, int dist_id, array[] real params, data real pwindow, int primary_id)

real	primarycensored_analytical_lcdf (data real d, int dist_id, array[] real params, data real pwindow, data real L, data real D, int primary_id, array[] real primary_params)

real	primarycensored_analytical_cdf (data real d, int dist_id, array[] real params, data real pwindow, data real L, data real D, int primary_id, array[] real primary_params)

real	dist_lcdf (real delay, array[] real params, int dist_id)

real	primary_lpdf (real x, int primary_id, array[] real params, real xmin, real xmax)

vector	primarycensored_ode (real t, vector y, array[] real theta, array[] real x_r, array[] int x_i)

real	primarycensored_log_normalizer (real log_cdf_D, real log_cdf_L, real L)

real	primarycensored_apply_truncation (real log_cdf, real log_cdf_L, real log_normalizer, real L)

vector	primarycensored_truncation_bounds (data real L, data real D, int dist_id, array[] real params, data real pwindow, int primary_id, array[] real primary_params)

real	primarycensored_cdf (data real d, int dist_id, array[] real params, data real pwindow, data real L, data real D, int primary_id, array[] real primary_params)

real	primarycensored_lcdf (data real d, int dist_id, array[] real params, data real pwindow, data real L, data real D, int primary_id, array[] real primary_params)

real	primarycensored_lpmf (data int d, int dist_id, array[] real params, data real pwindow, data real d_upper, data real L, data real D, int primary_id, array[] real primary_params)

vector	primarycensored_sone_lpmf_vectorized (int max_delay, data real L, data real D, int dist_id, array[] real params, data real pwindow, int primary_id, array[] real primary_params)

vector	primarycensored_sone_pmf_vectorized (int max_delay, data real L, data real D, int dist_id, array[] real params, data real pwindow, int primary_id, array[] real primary_params)

Function Documentation

◆ check_for_analytical()

int check_for_analytical	(	int	dist_id,
		int	primary_id )

Definition at line 12 of file primarycensored.stan.

Referenced by primarycensored_cdf(), and primarycensored_lcdf().

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◆ dist_lcdf()

real dist_lcdf	(	real	delay,
		array[]real	params,
		int	dist_id )

Definition at line 201 of file primarycensored.stan.

Referenced by primarycensored_ode().

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◆ expgrowth_lpdf()

real expgrowth_lpdf	(	real	x,
		real	xmin,
		real	xmax,
		real	r )

Definition at line 2 of file primarycensored.stan.

Referenced by primary_lpdf().

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◆ log_weibull_g()

real log_weibull_g	(	real	t,
		real	shape,
		real	scale )

Definition at line 106 of file primarycensored.stan.

Referenced by primarycensored_weibull_uniform_lcdf().

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◆ primary_lpdf()

real primary_lpdf	(	real	x,
		int	primary_id,
		array[]real	params,
		real	xmin,
		real	xmax )

Definition at line 225 of file primarycensored.stan.

References expgrowth_lpdf().

Referenced by primarycensored_ode().

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◆ primarycensored_analytical_cdf()

real primarycensored_analytical_cdf	(	data real	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	L,
		data real	D,
		int	primary_id,
		array[]real	primary_params )

Definition at line 194 of file primarycensored.stan.

References primarycensored_analytical_lcdf().

Referenced by primarycensored_cdf().

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◆ primarycensored_analytical_lcdf()

real primarycensored_analytical_lcdf	(	data real	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	L,
		data real	D,
		int	primary_id,
		array[]real	primary_params )

Definition at line 168 of file primarycensored.stan.

References primarycensored_analytical_lcdf_raw(), primarycensored_apply_truncation(), primarycensored_log_normalizer(), and primarycensored_truncation_bounds().

Referenced by primarycensored_analytical_cdf(), and primarycensored_lcdf().

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◆ primarycensored_analytical_lcdf_raw()

real primarycensored_analytical_lcdf_raw	(	data real	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		int	primary_id )

Definition at line 153 of file primarycensored.stan.

References primarycensored_gamma_uniform_lcdf(), primarycensored_lognormal_uniform_lcdf(), and primarycensored_weibull_uniform_lcdf().

Referenced by primarycensored_analytical_lcdf().

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◆ primarycensored_apply_truncation()

real primarycensored_apply_truncation	(	real	log_cdf,
		real	log_cdf_L,
		real	log_normalizer,
		real	L )

Definition at line 264 of file primarycensored.stan.

Referenced by primarycensored_analytical_lcdf(), primarycensored_cdf(), and primarycensored_lcdf().

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◆ primarycensored_cdf()

real primarycensored_cdf	(	data real	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	L,
		data real	D,
		int	primary_id,
		array[]real	primary_params )

Definition at line 301 of file primarycensored.stan.

References check_for_analytical(), primarycensored_analytical_cdf(), primarycensored_apply_truncation(), primarycensored_log_normalizer(), primarycensored_ode(), and primarycensored_truncation_bounds().

Referenced by primarycensored_lcdf().

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◆ primarycensored_gamma_uniform_lcdf()

real primarycensored_gamma_uniform_lcdf	(	data real	d,
		real	q,
		array[]real	params,
		data real	pwindow )

Definition at line 18 of file primarycensored.stan.

Referenced by primarycensored_analytical_lcdf_raw().

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◆ primarycensored_lcdf()

real primarycensored_lcdf	(	data real	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	L,
		data real	D,
		int	primary_id,
		array[]real	primary_params )

Definition at line 350 of file primarycensored.stan.

References check_for_analytical(), primarycensored_analytical_lcdf(), primarycensored_apply_truncation(), primarycensored_cdf(), primarycensored_log_normalizer(), and primarycensored_truncation_bounds().

Referenced by primarycensored_lpmf(), primarycensored_sone_lpmf_vectorized(), and primarycensored_truncation_bounds().

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◆ primarycensored_log_normalizer()

real primarycensored_log_normalizer	(	real	log_cdf_D,
		real	log_cdf_L,
		real	L )

Definition at line 257 of file primarycensored.stan.

Referenced by primarycensored_analytical_lcdf(), primarycensored_cdf(), primarycensored_lcdf(), primarycensored_lpmf(), and primarycensored_sone_lpmf_vectorized().

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◆ primarycensored_lognormal_uniform_lcdf()

real primarycensored_lognormal_uniform_lcdf	(	data real	d,
		real	q,
		array[]real	params,
		data real	pwindow )

Definition at line 61 of file primarycensored.stan.

Referenced by primarycensored_analytical_lcdf_raw().

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◆ primarycensored_lpmf()

real primarycensored_lpmf	(	data int	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	d_upper,
		data real	L,
		data real	D,
		int	primary_id,
		array[]real	primary_params )

Definition at line 390 of file primarycensored.stan.

References primarycensored_lcdf(), and primarycensored_log_normalizer().

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◆ primarycensored_ode()

vector primarycensored_ode	(	real	t,
		vector	y,
		array[]real	theta,
		array[]real	x_r,
		array[]int	x_i )

Definition at line 232 of file primarycensored.stan.

References dist_lcdf(), and primary_lpdf().

Referenced by primarycensored_cdf().

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◆ primarycensored_sone_lpmf_vectorized()

vector primarycensored_sone_lpmf_vectorized	(	int	max_delay,
		data real	L,
		data real	D,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		int	primary_id,
		array[]real	primary_params )

Definition at line 450 of file primarycensored.stan.

References primarycensored_lcdf(), and primarycensored_log_normalizer().

Referenced by primarycensored_sone_pmf_vectorized().

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◆ primarycensored_sone_pmf_vectorized()

vector primarycensored_sone_pmf_vectorized	(	int	max_delay,
		data real	L,
		data real	D,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		int	primary_id,
		array[]real	primary_params )

Definition at line 528 of file primarycensored.stan.

References primarycensored_sone_lpmf_vectorized().

Referenced by discretised_pmf().

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◆ primarycensored_truncation_bounds()

vector primarycensored_truncation_bounds	(	data real	L,
		data real	D,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		int	primary_id,
		array[]real	primary_params )