Functions in this File
real	expgrowth_cdf (real x, real xmin, real xmax, real r)

real	expgrowth_lcdf (real x, real xmin, real xmax, real r)

real	expgrowth_lpdf (real x, real xmin, real xmax, real r)

vector	primary_lcdf_vec (vector p, int primary_id, array[] real primary_params, data real pwindow)

real	discretestep_lcdf (data real d, vector boundaries, vector pmf, int primary_id, array[] real primary_params, data real pwindow)

vector	hazards_to_pmf (vector hazards)

real	discretehazard_lcdf (data real d, vector boundaries, vector hazards, int primary_id, array[] real primary_params, data real pwindow)

real	pstep_lcdf (real t, vector boundaries, vector pmf)

real	phazard_lcdf (real t, vector boundaries, vector hazards)

int	check_for_uniform_terms (int dist_id, int primary_id)

int	check_for_analytical (int dist_id, int primary_id)

real	primarycensored_uniform_lcdf_from_terms (vector terms_d, vector terms_q, data real pwindow)

vector	primarycensored_gamma_uniform_terms (real t, array[] real params)

real	primarycensored_gamma_uniform_lcdf (data real d, real q, array[] real params, data real pwindow)

vector	primarycensored_lognormal_uniform_terms (real t, array[] real params)

real	primarycensored_lognormal_uniform_lcdf (data real d, real q, array[] real params, data real pwindow)

real	log_weibull_g (real t, real shape, real scale)

vector	primarycensored_weibull_uniform_terms (real t, array[] real params)

real	primarycensored_weibull_uniform_lcdf (data real d, real q, array[] real params, data real pwindow)

vector	primarycensored_gengamma_uniform_terms (real t, array[] real params)

real	primarycensored_gengamma_uniform_lcdf (data real d, real q, array[] real params, data real pwindow)

real	primarycensored_analytical_lcdf_raw (data real d, int dist_id, array[] real params, data real pwindow, int primary_id, array[] real primary_params)

real	primarycensored_analytical_lcdf (data real d, int dist_id, array[] real params, data real pwindow, data real L, data real D, int primary_id, array[] real primary_params)

real	primarycensored_analytical_cdf (data real d, int dist_id, array[] real params, data real pwindow, data real L, data real D, int primary_id, array[] real primary_params)

int	check_for_analytical_vectorized (int dist_id, int primary_id, data real pwindow)

vector	primarycensored_uniform_terms (real t, data int dist_id, array[] real params)

vector	primarycensored_analytical_lcdf_vectorized (data int start, data int n, data int dist_id, array[] real params, data real pwindow)

int	dist_has_positive_support (data int dist_id)

real	primary_lcdf (real p, int primary_id, array[] real primary_params, data real pwindow)

int	lognormal_lcdf_underflows (real y, real mu, real sigma)

real	gengamma_lcdf (real y, real shape, real scale, real k)

real	dist_lcdf (real delay, array[] real params, int dist_id)

real	primary_lpdf (real x, int primary_id, array[] real params, real xmin, real xmax)

vector	primarycensored_ode (real t, vector y, array[] real theta, array[] real x_r, array[] int x_i)

real	primarycensored_log_normalizer (real log_cdf_D, real log_cdf_L, real L)

real	primarycensored_apply_truncation (real log_cdf, real log_cdf_L, real log_normalizer, real L)

vector	primarycensored_truncation_bounds (data real L, data real D, data int dist_id, array[] real params, data real pwindow, data int primary_id, array[] real primary_params)

real	primarycensored_cdf (data real d, data int dist_id, array[] real params, data real pwindow, data real L, data real D, data int primary_id, array[] real primary_params)

real	primarycensored_lcdf (data real d, data int dist_id, array[] real params, data real pwindow, data real L, data real D, data int primary_id, array[] real primary_params)

real	primarycensored_lpmf (data int d, data int dist_id, array[] real params, data real pwindow, data real d_upper, data real L, data real D, data int primary_id, array[] real primary_params)

vector	primarycensored_lcdf_vectorized (data int start, data int n, data int dist_id, array[] real params, data real pwindow, data int primary_id, array[] real primary_params)

vector	primarycensored_sone_lpmf_vectorized (data int max_delay, data real L, data real D, data int dist_id, array[] real params, data real pwindow, data int primary_id, array[] real primary_params)

vector	primarycensored_sone_pmf_vectorized (data int max_delay, data real L, data real D, data int dist_id, array[] real params, data real pwindow, data int primary_id, array[] real primary_params)

Function Documentation

◆ check_for_analytical()

int check_for_analytical	(	int	dist_id,
		int	primary_id )

Definition at line 139 of file primarycensored.stan.

References check_for_uniform_terms().

Referenced by primarycensored_cdf(), and primarycensored_lcdf().

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◆ check_for_analytical_vectorized()

int check_for_analytical_vectorized	(	int	dist_id,
		int	primary_id,
		data real	pwindow )

Definition at line 325 of file primarycensored.stan.

References check_for_uniform_terms().

Referenced by primarycensored_lcdf_vectorized().

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◆ check_for_uniform_terms()

int check_for_uniform_terms	(	int	dist_id,
		int	primary_id )

Definition at line 135 of file primarycensored.stan.

Referenced by check_for_analytical(), and check_for_analytical_vectorized().

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◆ discretehazard_lcdf()

real discretehazard_lcdf	(	data real	d,
		vector	boundaries,
		vector	hazards,
		int	primary_id,
		array[]real	primary_params,
		data real	pwindow )

Definition at line 109 of file primarycensored.stan.

References discretestep_lcdf(), and hazards_to_pmf().

Referenced by primarycensored_analytical_lcdf_raw().

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◆ discretestep_lcdf()

real discretestep_lcdf	(	data real	d,
		vector	boundaries,
		vector	pmf,
		int	primary_id,
		array[]real	primary_params,
		data real	pwindow )

Definition at line 42 of file primarycensored.stan.

References primary_lcdf(), and primary_lcdf_vec().

Referenced by discretehazard_lcdf(), and primarycensored_analytical_lcdf_raw().

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◆ dist_has_positive_support()

int dist_has_positive_support ( data int dist_id )

Definition at line 362 of file primarycensored.stan.

Referenced by dist_lcdf(), primarycensored_cdf(), primarycensored_lcdf(), primarycensored_lcdf_vectorized(), primarycensored_lpmf(), primarycensored_sone_lpmf_vectorized(), and primarycensored_truncation_bounds().

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◆ dist_lcdf()

real dist_lcdf	(	real	delay,
		array[]real	params,
		int	dist_id )

Definition at line 398 of file primarycensored.stan.

References dist_has_positive_support(), gengamma_lcdf(), lognormal_lcdf_underflows(), phazard_lcdf(), and pstep_lcdf().

Referenced by primarycensored_ode().

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◆ expgrowth_cdf()

real expgrowth_cdf	(	real	x,
		real	xmin,
		real	xmax,
		real	r )

Definition at line 2 of file primarycensored.stan.

Referenced by expgrowth_lcdf().

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◆ expgrowth_lcdf()

real expgrowth_lcdf	(	real	x,
		real	xmin,
		real	xmax,
		real	r )

Definition at line 14 of file primarycensored.stan.

References expgrowth_cdf().

Referenced by primary_lcdf().

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◆ expgrowth_lpdf()

real expgrowth_lpdf	(	real	x,
		real	xmin,
		real	xmax,
		real	r )

Definition at line 23 of file primarycensored.stan.

Referenced by primary_lpdf().

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◆ gengamma_lcdf()

real gengamma_lcdf	(	real	y,
		real	shape,
		real	scale,
		real	k )

Definition at line 395 of file primarycensored.stan.

Referenced by dist_lcdf().

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◆ hazards_to_pmf()

vector hazards_to_pmf ( vector hazards )

Definition at line 100 of file primarycensored.stan.

Referenced by discretehazard_lcdf(), and phazard_lcdf().

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◆ log_weibull_g()

real log_weibull_g	(	real	t,
		real	shape,
		real	scale )

Definition at line 208 of file primarycensored.stan.

Referenced by primarycensored_weibull_uniform_terms().

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◆ lognormal_lcdf_underflows()

int lognormal_lcdf_underflows	(	real	y,
		real	mu,
		real	sigma )

Definition at line 389 of file primarycensored.stan.

Referenced by dist_lcdf().

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◆ phazard_lcdf()

real phazard_lcdf	(	real	t,
		vector	boundaries,
		vector	hazards )

Definition at line 132 of file primarycensored.stan.

References hazards_to_pmf(), and pstep_lcdf().

Referenced by dist_lcdf().

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◆ primary_lcdf()

real primary_lcdf	(	real	p,
		int	primary_id,
		array[]real	primary_params,
		data real	pwindow )

Definition at line 376 of file primarycensored.stan.

References expgrowth_lcdf().

Referenced by discretestep_lcdf(), and primary_lcdf_vec().

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◆ primary_lcdf_vec()

vector primary_lcdf_vec	(	vector	p,
		int	primary_id,
		array[]real	primary_params,
		data real	pwindow )

Definition at line 33 of file primarycensored.stan.

References primary_lcdf().

Referenced by discretestep_lcdf().

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◆ primary_lpdf()

real primary_lpdf	(	real	x,
		int	primary_id,
		array[]real	params,
		real	xmin,
		real	xmax )

Definition at line 449 of file primarycensored.stan.

References expgrowth_lpdf().

Referenced by primarycensored_ode().

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◆ primarycensored_analytical_cdf()

real primarycensored_analytical_cdf	(	data real	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	L,
		data real	D,
		int	primary_id,
		array[]real	primary_params )

Definition at line 318 of file primarycensored.stan.

References primarycensored_analytical_lcdf().

Referenced by primarycensored_cdf().

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◆ primarycensored_analytical_lcdf()

real primarycensored_analytical_lcdf	(	data real	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	L,
		data real	D,
		int	primary_id,
		array[]real	primary_params )

Definition at line 292 of file primarycensored.stan.

References primarycensored_analytical_lcdf_raw(), primarycensored_apply_truncation(), primarycensored_log_normalizer(), and primarycensored_truncation_bounds().

Referenced by primarycensored_analytical_cdf(), and primarycensored_lcdf().

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◆ primarycensored_analytical_lcdf_raw()

real primarycensored_analytical_lcdf_raw	(	data real	d,
		int	dist_id,
		array[]real	params,
		data real	pwindow,
		int	primary_id,
		array[]real	primary_params )

Definition at line 256 of file primarycensored.stan.

References discretehazard_lcdf(), discretestep_lcdf(), primarycensored_gamma_uniform_lcdf(), primarycensored_gengamma_uniform_lcdf(), primarycensored_lognormal_uniform_lcdf(), and primarycensored_weibull_uniform_lcdf().

Referenced by primarycensored_analytical_lcdf().

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◆ primarycensored_analytical_lcdf_vectorized()

vector primarycensored_analytical_lcdf_vectorized	(	data int	start,
		data int	n,
		data int	dist_id,
		array[]real	params,
		data real	pwindow )

Definition at line 343 of file primarycensored.stan.

References primarycensored_uniform_lcdf_from_terms(), and primarycensored_uniform_terms().

Referenced by primarycensored_lcdf_vectorized().

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◆ primarycensored_apply_truncation()

real primarycensored_apply_truncation	(	real	log_cdf,
		real	log_cdf_L,
		real	log_normalizer,
		real	L )

Definition at line 488 of file primarycensored.stan.

Referenced by primarycensored_analytical_lcdf(), primarycensored_cdf(), and primarycensored_lcdf().

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◆ primarycensored_cdf()

real primarycensored_cdf	(	data real	d,
		data int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	L,
		data real	D,
		data int	primary_id,
		array[]real	primary_params )

Definition at line 533 of file primarycensored.stan.

References check_for_analytical(), dist_has_positive_support(), primarycensored_analytical_cdf(), primarycensored_apply_truncation(), primarycensored_log_normalizer(), primarycensored_ode(), and primarycensored_truncation_bounds().

Referenced by primarycensored_lcdf().

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◆ primarycensored_gamma_uniform_lcdf()

real primarycensored_gamma_uniform_lcdf	(	data real	d,
		real	q,
		array[]real	params,
		data real	pwindow )

Definition at line 177 of file primarycensored.stan.

Referenced by primarycensored_analytical_lcdf_raw().

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◆ primarycensored_gamma_uniform_terms()

vector primarycensored_gamma_uniform_terms	(	real	t,
		array[]real	params )

Definition at line 160 of file primarycensored.stan.

Referenced by primarycensored_uniform_terms().

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◆ primarycensored_gengamma_uniform_lcdf()

real primarycensored_gengamma_uniform_lcdf	(	data real	d,
		real	q,
		array[]real	params,
		data real	pwindow )

Definition at line 248 of file primarycensored.stan.

References primarycensored_gengamma_uniform_terms(), and primarycensored_uniform_lcdf_from_terms().

Referenced by primarycensored_analytical_lcdf_raw().

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◆ primarycensored_gengamma_uniform_terms()

vector primarycensored_gengamma_uniform_terms	(	real	t,
		array[]real	params )

Definition at line 233 of file primarycensored.stan.

Referenced by primarycensored_gengamma_uniform_lcdf(), and primarycensored_uniform_terms().

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◆ primarycensored_lcdf()

real primarycensored_lcdf	(	data real	d,
		data int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	L,
		data real	D,
		data int	primary_id,
		array[]real	primary_params )

Definition at line 589 of file primarycensored.stan.

References check_for_analytical(), dist_has_positive_support(), primarycensored_analytical_lcdf(), primarycensored_apply_truncation(), primarycensored_cdf(), primarycensored_log_normalizer(), and primarycensored_truncation_bounds().

Referenced by primarycensored_lcdf_vectorized(), primarycensored_lpmf(), primarycensored_sone_lpmf_vectorized(), and primarycensored_truncation_bounds().

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◆ primarycensored_lcdf_vectorized()

vector primarycensored_lcdf_vectorized	(	data int	start,
		data int	n,
		data int	dist_id,
		array[]real	params,
		data real	pwindow,
		data int	primary_id,
		array[]real	primary_params )

Definition at line 705 of file primarycensored.stan.

References check_for_analytical_vectorized(), dist_has_positive_support(), primarycensored_analytical_lcdf_vectorized(), and primarycensored_lcdf().

Referenced by primarycensored_sone_lpmf_vectorized().

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◆ primarycensored_log_normalizer()

real primarycensored_log_normalizer	(	real	log_cdf_D,
		real	log_cdf_L,
		real	L )

Definition at line 481 of file primarycensored.stan.

Referenced by primarycensored_analytical_lcdf(), primarycensored_cdf(), primarycensored_lcdf(), primarycensored_lpmf(), and primarycensored_sone_lpmf_vectorized().

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◆ primarycensored_lognormal_uniform_lcdf()

real primarycensored_lognormal_uniform_lcdf	(	data real	d,
		real	q,
		array[]real	params,
		data real	pwindow )

Definition at line 200 of file primarycensored.stan.

References primarycensored_lognormal_uniform_terms(), and primarycensored_uniform_lcdf_from_terms().

Referenced by primarycensored_analytical_lcdf_raw().

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◆ primarycensored_lognormal_uniform_terms()

vector primarycensored_lognormal_uniform_terms	(	real	t,
		array[]real	params )

Definition at line 185 of file primarycensored.stan.

Referenced by primarycensored_lognormal_uniform_lcdf(), and primarycensored_uniform_terms().

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◆ primarycensored_lpmf()

real primarycensored_lpmf	(	data int	d,
		data int	dist_id,
		array[]real	params,
		data real	pwindow,
		data real	d_upper,
		data real	L,
		data real	D,
		data int	primary_id,
		array[]real	primary_params )

Definition at line 637 of file primarycensored.stan.

References dist_has_positive_support(), primarycensored_lcdf(), and primarycensored_log_normalizer().

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◆ primarycensored_ode()

vector primarycensored_ode	(	real	t,
		vector	y,
		array[]real	theta,
		array[]real	x_r,
		array[]int	x_i )

Definition at line 456 of file primarycensored.stan.

References dist_lcdf(), and primary_lpdf().

Referenced by primarycensored_cdf().

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◆ primarycensored_sone_lpmf_vectorized()

vector primarycensored_sone_lpmf_vectorized	(	data int	max_delay,
		data real	L,
		data real	D,
		data int	dist_id,
		array[]real	params,
		data real	pwindow,
		data int	primary_id,
		array[]real	primary_params )

Definition at line 727 of file primarycensored.stan.

References dist_has_positive_support(), primarycensored_lcdf(), primarycensored_lcdf_vectorized(), and primarycensored_log_normalizer().

Referenced by primarycensored_sone_pmf_vectorized().

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◆ primarycensored_sone_pmf_vectorized()

vector primarycensored_sone_pmf_vectorized	(	data int	max_delay,
		data real	L,
		data real	D,
		data int	dist_id,
		array[]real	params,
		data real	pwindow,
		data int	primary_id,
		array[]real	primary_params )

Definition at line 816 of file primarycensored.stan.

References primarycensored_sone_lpmf_vectorized().

Referenced by discretised_pmf().

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◆ primarycensored_truncation_bounds()

vector primarycensored_truncation_bounds	(	data real	L,
		data real	D,
		data int	dist_id,
		array[]real	params,
		data real	pwindow,
		data int	primary_id,
		array[]real	primary_params )