print method for class "fv_posterior". Prints the available
value types and then falls back to the data.table print method.
Usage
# S3 method for fv_posterior
print(x, ...)Arguments
- x
An output from output from
fv_tidy_posterior().- ...
Pass additional arguments to
data.tableprinting method.
See also
fv_tidy_posterior
Functions used for postprocessing of model fits
convert_to_stanfit(),
extract_draws(),
extract_forecast_dates(),
fv_extract_forecast(),
fv_posterior(),
fv_tidy_posterior(),
link_dates_with_posterior(),
link_obs_with_posterior(),
plot.fv_posterior(),
quantiles_to_long(),
summary.fv_posterior(),
update_voc_label()
Examples
posterior <- fv_example(strains = 2, type = "posterior")
# case summary
posterior
#> Available value types: model, cases, voc_frac, voc_advantage, growth, rt, raw
#> value_type variable clean_name date type obs
#> 1: model avg_voc_advantage Average VOC effect <NA> NA
#> 2: model beta Beta <NA> NA
#> 3: model init_cases[1] Initial cases <NA> NA
#> 4: model init_voc_cases[1] Initial VOC cases <NA> NA
#> 5: model phi[1] Notification overdispersion <NA> NA
#> ---
#> 469: raw log_lik[11] <NA> NA
#> 470: raw log_lik[12] <NA> NA
#> 471: raw log_lik[13] <NA> NA
#> 472: raw log_lik[14] <NA> NA
#> 473: raw log_lik[15] <NA> NA
#> observed forecast_start exponentiated mean median sd
#> 1: NA NA FALSE 0.589 0.589 3.08e-02
#> 2: NA NA FALSE 0.230 0.260 4.08e-01
#> 3: NA NA FALSE 89800.000 89600.000 6.14e+03
#> 4: NA NA FALSE 222.000 221.000 2.27e+01
#> 5: NA NA FALSE 95.300 78.000 7.42e+01
#> ---
#> 469: NA NA NA -14.700 -14.600 6.93e-01
#> 470: NA NA NA -13.800 -13.800 5.79e-01
#> 471: NA NA NA -13.500 -13.400 8.67e-01
#> 472: NA NA NA -8.160 -8.070 5.98e-01
#> 473: NA NA NA -7.730 -7.590 6.97e-01
#> mad q5 q20 q80 q95 rhat ess_bulk ess_tail
#> 1: 2.97e-02 0.541 0.564 0.613 0.639 1.00 1270 1250
#> 2: 4.53e-01 -0.466 -0.151 0.621 0.846 1.00 779 923
#> 3: 5.82e+03 79900.000 84800.000 94600.000 99900.000 1.00 1360 1340
#> 4: 2.16e+01 186.000 203.000 240.000 261.000 1.00 1610 1060
#> 5: 5.32e+01 21.200 41.200 135.000 231.000 1.00 746 1030
#> ---
#> 469: 6.23e-01 -16.000 -15.200 -14.100 -13.700 1.00 1300 1500
#> 470: 5.44e-01 -14.800 -14.300 -13.400 -13.000 1.01 915 1160
#> 471: 7.77e-01 -15.100 -14.100 -12.700 -12.300 1.00 1220 1490
#> 472: 4.91e-01 -9.200 -8.560 -7.690 -7.420 1.00 1070 1250
#> 473: 5.32e-01 -9.010 -8.150 -7.200 -6.880 1.00 910 1320