Projects

Ongoing analysis projects from the group

Ongoing analysis and research projects from the group. For completed work, see our publications. For reusable tools, see our software.

BVDOutbreakSize

Joint Bayesian generative Turing model for the 2026 DRC BVD outbreak. Combines exports, deaths and reported suspected cases (with ascertainment) in a single posterior. Includes a no-onward-transmission deaths lower bound.

Julia · Updated Jul 2026

Sam Abbott Sebastian Funk

andv-linelist-analysis

Joint estimation of incubation period, transmission timing, and R(t) for the Epuyén ANDV outbreak

Julia · Updated Jun 2026

Sam Abbott Sebastian Funk

eval-by-method

Thematic analysis of model performance in the European COVID-19 Forecast Hub

R · Updated Jun 2026

Katharine Sherratt Sebastian Funk Sam Abbott

evalwwforecasts

Evaluation of forecasts with and without incorporating wastewater

R · Updated May 2026

Kaitlyn Johnson Ciara McCarthy Sebastian Funk

mme-review

Systematic review of multi-model ensemble evaluations in infectious disease

TeX · Updated Sep 2025

Katharine Sherratt Sebastian Funk

bdbv-linelist-analysis

Bayesian re-analysis of the 2012 Isiro Bundibugyo Ebola virus line list (Rosello et al. 2015)

Julia · Updated Jun 2026

Sebastian Funk Sam Abbott

llm-epi-composition

Evaluating LLM ability to compose epidemic models with and without validated components

Julia · Updated Jun 2026

Sebastian Funk Sam Abbott

evalvariantnowcasthub

A code repository to characterise and evaluate data and nowcasts on SARS-CoV-2 variant dynamics in the U.S. from the U.S. variant nowcast hub

R · Updated Jun 2026

Kaitlyn Johnson

delayscompare

Assessing the impact of misspecifying epidemiological distributions on predictive performance.

R · Updated May 2026

Ciara McCarthy Sebastian Funk

attenuated-renewal

Bayesian forecasting using attenuated renewal-based methods for overdispersed contact networks

R · Updated Jun 2026

William Green

sc_model_comparison

Model comparison study on social contact data.

Jupyter Notebook · Updated May 2026

Toshiaki Asakura Sebastian Funk

sc_heavy_tail_mean

NPIs and social contact relationship

Julia · Updated Jun 2026

Toshiaki Asakura

UDEs_recovering_functional_forms

Recovering the behavioural response during an epidemic using universal differential equations and symbolic regression.

Julia · Updated Jul 2026

Charlotte Holt

evalbehtransmission

Evaluation of nowcasting and forecasting using behavioural data including CoMix and Google Mobility

R · Updated Jun 2026

Luke Burton

ComposableProbabilisticIDModels

No description available