Projects

Ongoing analysis projects from the group

Ongoing analysis and research projects from the group. For completed work, see our publications. For reusable tools, see our software.

ComposableProbabilisticIDModels

We make the case for composable probabilistic infectious disease models, outline proposed requirements, and present a proof of concept built on Julia’s type system and Turing.jl

TeX · Updated Jan 2026

Sam Abbott Sebastian Funk

eval-by-method

Thematic analysis of model performance in the European COVID-19 Forecast Hub

R · Updated Jan 2026

Katharine Sherratt Sebastian Funk Sam Abbott

evalwwforecasts

Evaluation of forecasts with and without incorporating wastewater

R · Updated Jan 2026

Kaitlyn Johnson Ciara McCarthy Sebastian Funk

mme-review

Systematic review of multi-model ensemble evaluations in infectious disease

TeX · Updated Sep 2025

Katharine Sherratt Sebastian Funk

llm-epi-composition

Evaluating LLM ability to compose epidemic models with and without validated components

R · Updated Jan 2026

Sebastian Funk

delayscompare

Assessing the impact of misspecifying epidemiological distributions on predictive performance.

R · Updated Jan 2026

Ciara McCarthy Sebastian Funk

evalvariantnowcasthub

A code repository to characterise and evaluate data and nowcasts on SARS-CoV-2 variant dynamics in the U.S. from the U.S. variant nowcast hub

R · Updated Jan 2026

Kaitlyn Johnson

sc_model_comparison

Model comparison study on social contact data.

Julia · Updated Jan 2026

Toshiaki Asakura

attenuated-renewal

Bayesian forecasting using attenuated renewal-based methods for overdispersed contact networks

R · Updated Jan 2026

William Green