Package index

Simulation

Branching processes

Simulate branching processes

chain_sim()

Simulate transmission chains using a branching process

chain_sim_susc()

Simulate a single chain using a branching process while accounting for depletion of susceptibles.

Likelihood calculations

Estimate likelihoods

chain_ll()

Calculate the log-likelihood for the outcome of a branching process

Reparametrized distributions

dborel()

Density of the Borel distribution

rborel()

Random number generator from the Borel distribution

rnbinom_mean_disp()

Negative binomial random numbers parametrized in terms of mean and dispersion coefficient

Miscellaneous

Data

covid19_sa

COVID-19 Data Repository for South Africa