Calculate proportion of runs that have controlled outbreak

Source: R/aux_functions.R

Calculate proportion of runs that have controlled outbreak

extinct_prob(outbreak_df_week = NULL, cap_cases = NULL, week_range = 12:16)

Arguments

outbreak_df_week

data.table weekly cases produced by the outbreak model

cap_cases

integer number of cumulative cases at which the branching process was terminated

week_range

integer vector giving the (zero indexed) week range to test for whether an extinction occurred.

Author

Joel Hellewell