Function reference • ringbp

Model
`outbreak_model()`	Run a single instance of the branching process model
`outbreak_setup()`	Set up initial cases for branching process
`outbreak_step()`	Move forward one generation in the branching process
Helper functions
Probability distribution manipulation
`dist_setup()`	Create partial function to sample from gamma distributions
`inf_fn()`	Samples the serial interval for given incubation period samples
Loop wrappers for scenario modelling
`parameter_sweep()`	Sweep across parameters
`scenario_sim()`	Run a specified number of simulations with identical parameters
Post-processing
`detect_extinct()`	Calculate whether outbreaks went extinct or not
`extinct_prob()`	Calculate proportion of runs that have controlled outbreak

Reference