Package index

Model

Run outbreak scenario (multiple outbreak simulations) under one set of parameters

scenario_sim()

Run a specified number of simulations with identical parameters

Outbreak simulation model components

outbreak_model()

Run a single instance of the branching process model

outbreak_setup()

Set up initial cases for branching process

outbreak_step()

Move forward one generation in the branching process

Helper functions

Probability distribution manipulation

incubation_to_generation_time()

Convert symptom onset times to generation times

Model parameters and control options

delay_opts()

Create a list of delay distributions to run the ringbp model

event_prob_opts()

Create a list of event probabilities to run the ringbp model

intervention_opts()

Create a list of intervention settings to run the ringbp model

offspring_opts()

Create a list of offspring distributions to run the ringbp model

sim_opts()

Create a list of simulation control options for the ringbp model

Post-processing

extinct_prob() detect_extinct()

Outbreak extinction functions