Estimate Cases by Report Date — estimates_by_report_date • EpiNow2

Either extracts or converts reported cases from an input data table. For output from estimate_infections this is a simple filtering step.

Usage

estimates_by_report_date(
  estimates,
  CrIs = c(0.2, 0.5, 0.9),
  target_folder = NULL,
  samples = TRUE
)

Arguments

estimates: List of data frames as output by estimate_infections
CrIs: Numeric vector of credible intervals to calculate.
target_folder: Character string specifying where to save results (will create if not present).
samples: Logical, defaults to TRUE. Should samples be saved

Value

A list of samples and summarised estimates of estimated cases by date of report.