Extract all samples from a stan fit

This function is deprecated. Use get_samples() on the fitted model object (e.g. the result of estimate_infections()) instead, with format = "list" to obtain the same list of arrays that this function returns.

If the object argument is a <stanfit> object, it simply returns the result of rstan::extract(). If it is a <CmdStanMCMC> it returns samples in the same format as rstan::extract() does for <stanfit> objects.

Usage

extract_samples(stan_fit, pars = NULL, include = TRUE)

Arguments

stan_fit

A <stanfit> or <CmdStanMCMC> object as returned by fit_model().

pars

Any selection of parameters to extract

include

whether the parameters specified in pars should be included (TRUE, the default) or excluded (FALSE)

Value

List of data.tables with samples

See also

get_samples() for the recommended replacement