Extract Parameter Samples from a Stan Model

This function has been deprecated. Use format_simulation_output() for simulation outputs or get_samples() for estimation outputs instead.

Usage

extract_parameter_samples(
  stan_fit,
  data,
  reported_dates,
  imputed_dates,
  reported_inf_dates,
  drop_length_1 = FALSE,
  merge = FALSE
)

Arguments

stan_fit

A <stanfit> or <CmdStanMCMC> object as returned by fit_model().

data

A list of the data supplied to the simulation.

reported_dates

A vector of dates to report estimates for.

imputed_dates

A vector of dates to report imputed reports for.

reported_inf_dates

A vector of dates to report infection estimates for.

drop_length_1

Logical; drop dimensions of length 1 in arrays extracted from the stan fit. Used in simulations where there's only 1 realization.

merge

if TRUE, merge samples into a single data.table using rbindlist. If FALSE returns a list of samples by parameter.

Value

A list of <data.frame>'s each containing the posterior of a parameter